No packages match
SKAT - SNP-Set (Sequence) Kernel Association Test
Functions for kernel-regression-based association tests including Burden test, SKAT and SKAT-O. These methods aggregate individual SNP score statistics in a SNP set and efficiently compute SNP-set level p-values.
Last updated
sequencecpp
10.10 score 55 stars 13 dependents 399 scripts 1.5k downloadsMetaSKAT - Meta Analysis for SNP-Set (Sequence) Kernel Association Test
Functions for Meta-analysis Burden Test, Sequence Kernel Association Test (SKAT) and Optimal SKAT (SKAT-O) by Lee et al. (2013) <doi:10.1016/j.ajhg.2013.05.010>. These methods use summary-level score statistics to carry out gene-based meta-analysis for rare variants.
Last updated
cpp
2.46 score 1 stars 29 scripts 584 downloads