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MetaSKAT.Rnwusingutils::SweavePackage: MetaSKAT 0.90
MetaSKAT: Meta Analysis for SNP-Set (Sequence) Kernel Association Test
Functions for Meta-analysis Burden Test, Sequence Kernel Association Test (SKAT) and Optimal SKAT (SKAT-O) by Lee et al. (2013) <doi:10.1016/j.ajhg.2013.05.010>. These methods use summary-level score statistics to carry out gene-based meta-analysis for rare variants.
Authors:
MetaSKAT_0.90.tar.gz
MetaSKAT_0.90.zip(r-4.7-x86_64)MetaSKAT_0.90.zip(r-4.7-arm64)MetaSKAT_0.90.zip(r-4.6-x86_64)MetaSKAT_0.90.zip(r-4.6-arm64)MetaSKAT_0.90.zip(r-4.5-x86_64)
MetaSKAT_0.90.tgz(r-4.6-x86_64)MetaSKAT_0.90.tgz(r-4.6-arm64)MetaSKAT_0.90.tgz(r-4.5-x86_64)MetaSKAT_0.90.tgz(r-4.5-arm64)
MetaSKAT_0.90.tar.gz(r-4.7-arm64)MetaSKAT_0.90.tar.gz(r-4.7-x86_64)MetaSKAT_0.90.tar.gz(r-4.6-arm64)MetaSKAT_0.90.tar.gz(r-4.6-x86_64)
MetaSKAT_0.90.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
MetaSKAT/json (API)
| # Install 'MetaSKAT' in R: |
| install.packages('MetaSKAT', repos = c('https://leeshawn.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- Example - Example dataset
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:61cb579bbc. Checks:15 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | OK | 92 | ||
| linux-devel-x86_64 | OK | 118 | ||
| source / vignettes | OK | 155 | ||
| linux-release-arm64 | OK | 92 | ||
| linux-release-x86_64 | OK | 109 | ||
| macos-release-arm64 | OK | 166 | ||
| macos-release-x86_64 | OK | 389 | ||
| macos-oldrel-arm64 | OK | 231 | ||
| macos-oldrel-x86_64 | OK | 359 | ||
| windows-devel-arm64 | OK | 351 | ||
| windows-devel-x86_64 | OK | 147 | ||
| windows-release-arm64 | OK | 376 | ||
| windows-release-x86_64 | OK | 131 | ||
| windows-oldrel-x86_64 | OK | 125 | ||
| wasm-release | OK | 84 |
Exports:Generate_Meta_FilesGenerate_Meta_Files_FromDosageMeta_Null_ModelMeta_Null_Model_EmmaXMetaSKAT_MSSD_ALLMetaSKAT_MSSD_OneSetMetaSKAT_wZOpen_MSSD_File_2Read
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Example dataset | Example |
| Generate summary statistics files | Generate_Meta_Files Generate_Meta_Files_FromDosage |
| Get parameters and residuals from H0 | Meta_Null_Model Meta_Null_Model_EmmaX |
| Meta analysis SKAT with summary data from each study cohort. | MetaSKAT_MSSD_ALL MetaSKAT_MSSD_OneSet |
| Meta analysis SKAT with individual level genotype data | MetaSKAT_wZ |
| Read Meta SSD and Info files | Open_MSSD_File_2Read |